Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
2012 | 148 | Complete | 255-263
Tytuł artykułu

Molecular polymorphism and genetic relationships in date palm (Phoenix dactylifera L.): The utility of nuclear microsatellite markers

Treść / Zawartość
Abstrakt, słowa kluczowe
Dodatkowe informacje
Warianty tytułu
Języki publikacji
Due to the economic importance of the date palm in Tunisia, we attempt to develop microsatellite markers for the genetic characterisation and identification of cultivars. This characterisation will enable us to obtain an extensive understanding of the local genetic diversity and its distribution. Fourteen microsatellite loci of Phoenix dactylifera L. were tested to examine the genetic diversity in the Tunisian date palm germplasm; 74 female and 27 male cultivars were represented. A total of 136 alleles and 311 genotypes were detected based on 14 loci microsatellite. A high level of polymorphism was detected at the DNA level. The 101 date palms from three main oases exhibited a high degree of genetic diversity and were structured independently of their geographical origin and sex. All the local date palm accessions were successfully fingerprinted and easily distinguished based on only five loci. The possibility of using microsatellites in the large-scale molecular labelling of offshoots and in vitro plantlets and in the certification of plant material is discussed.
Scientia Horticulturae , ISSN 03044238
Opis fizyczny
  • Laboratoire de Génétique Moléculaire, Immunologie & Biotechnologie, Faculté des Sciences de Tunis, Campus Universitaire, El Manar I, Tunis, Tunisia ,
  • Laboratoire de Génétique Moléculaire, Immunologie & Biotechnologie, Faculté des Sciences de Tunis, Campus Universitaire, El Manar I, Tunis, Tunisia
  • Laboratoire de Génétique Moléculaire, Immunologie & Biotechnologie, Faculté des Sciences de Tunis, Campus Universitaire, El Manar I, Tunis, Tunisia
  • INRA, UMR 1097 Diversité et Adaptation des Plantes Cultivées, 2 Place Viala, 34060 Montpellier cedex 1, France
  • Laboratoire de Génétique Moléculaire, Immunologie & Biotechnologie, Faculté des Sciences de Tunis, Campus Universitaire, El Manar I, Tunis, Tunisia
  • IRD (Institut de Recherche pour le Développement), UMR DGPC/DYNADIV, Montpellier, France
  • 1. Akkak, A.& Scariot, V.& Torello Marinoni, D.& Boccacci, P.& Beltramo, C.& Botta, R., "Development and evaluation of microsatellite markers in Phoenix dactylifera L. and their transferability to other Phoenix species", Biol. Plant., vol. 53, 2009, p.164-166
  • 2. Al Dous, E.K.& George, B.& AL-Mahmoud, M.E.& AL-Jaber, M.& Wang, Y.& Salameh, Y.M.& AL-Azwani, E.K., "De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)", Nat. Biotechnol., vol. 29, 2011, p.521-527
  • 3. Arabnezhad, H.& Bahar, M.& Reza Mohammadi, H.& Latifian, M., "Development, characterization and use of microsatellite markers for germplasm analysis in date palm (Phoenix dactylifera L.)", Sci. Hortic., vol. 134, 2012, p.150-156
  • 4. Al-Ruqaishi, I.A.& Davey, M.& Alderson, P.& Mayes, S., "Genetic relationships and genotype tracing in date palm (Phoenix dactylifera L.) in Oman based on microsatellite markers", Plant Genet. Resour., vol. 61, 2008, p.70-72
  • 5. Barrow, S., "A monograph of Phoenix L. (Palmae: Coryphoideae)", Kew Bull., vol. 53, 1998, p.513-575
  • 6. Belkhir, K., Borsa, P., Chikhi, L., Raufaste, N., Bonhomme, F., 2004. GENETIX 4.05, logiciel sous WindowsTM pour la génétique des populations. Laboratoire Génome, Populations, Interactions CNRS UMR 5000. Université de Montpellier II, Montpellier, France.
  • 7. Billotte, N.& Marseillac, N.& Brottier, P.& Noyer, J.L.& Jacquemoud-Collet, J.P.& Moreau, C.& Couvreur, T.& Chevallier, M.H.& Pintaud, J.C.& Risterucci, A.M., "Nuclear microsatellite markers for the date palm (Phoenix dactylifera L.): characterization and utility across the genus Phoenix and in other palm genera", Mol. Ecol. Notes, vol. 4, 2004, p.256-258
  • 8. Bouabidi, H.& Reynes, M.& Rouissi, M.B., "Critères de caractérisation des fruits de quelques cultivars de palmier dattier (Phoenix dactylifera L.) du sud tunisien", Ann. Inst. Rech. Agric. Tunisie, vol. 69, 1996, p.73-87
  • 9. Chakraborty, R.& Jin, L., "A unified approach to study hypervariable polymorphisms: statistical considerations of determining relatedness and population distances", Chakraborty, R.& Epplen, J.T.& Jeffreys, A.J. (Eds.), DNA Fingerprinting: State of the Science, 1993, p.153-175
  • 10. Dransfield, J.& Uhl, N.W.& Asmussen, C.B.& Baker, W.J.& Harley, M.& Lewis, C., "Genera Palmarum: The Evolution and Classification of Palms", 2008
  • 11. Elshibli, S.& Korpelainen, H., "Microsatellites markers reveal high genetic diversity in date palm (Phoenix dactylifera L.) germplasm from Sudan", Genetica, vol. 134, 2008, p.251-260
  • 12. Goldstein, D.B.& Pollock, D.D., "Launching microsatellites: a review of mutation processes and methods of phylogenetic inference", J. Hered., vol. 88, 1997, p.335-342
  • 13. Hamwieh, A.& Farah, J.& Moussally, S.& Al-Sham’aa, K.& Almer, K.& Khierallah, H.& Udupa, S.& Lababidi, S.& Malek, J.A.& Aaouine, M.& Baum, M., "Development of 1000 microsatellite markers across the date palm (Phoenix dactylifera L.) genome", Proc. 4th 269 Int. Date Palm Conference, Acta Hort., vol. 882, 2010, p.269-277
  • 14. Hussam, S.M.& Khierallah Saleh, M.& Bader Baum, M.& Hamwieh, A., "Genetic diversity of iraqi date palms revealed by microsatellite polymorphism", J. Am. Soc. Hort. Sci., vol. 136, 2011, p.282-287
  • 15. Liu, K.& Muse, S.V., "PowerMarker: integrated analysis environment for genetic marker data", Bioinformatics, vol. 21, 9, 2005, p.2128-2129
  • 16. Nei, M., "Molecular Evolutionary Genetics", 1987
  • 17. Ould Mohamed Salem, A.& Trifi, M.& Sakka, H.& Rhouma, A.& Marrakchi, M., "Genetic inheritance analysis of four enzymes in date palm (Phoenix dactylifera L.)", Genet. Resour. Crop Evol., vol. 48, 2001, p.361-368
  • 18. Raymond, M.& Rousset, F., "GENEPOP (ver1.2): A population genetics software for exact test and ecumenicism", J. Hered., vol. 86, 1995, p.248-249
  • 19. Reynes, M.& Bouabidi, H.& Piombi, G.& Risterrucci, A.M., "Caractérisation des principales variétés des dates cultivées dans la région de Tozeur", Fruits, vol. 49, 1994, p.289-298
  • 20. Rhouma, A., "Le palmier dattier en Tunisie. I: le patrimoine génétique", 1994
  • 21. Sakka, H.& Zehdi, S.& Ould Mohamed Salem, A.& Rhouma, A.& Marrakchi, M.& Trifi, M., "Genetic polymorphism of plastid DNA in Tunisian date palm germplasm (Phoenix dactylifera L.) detected with PCR-RFLP", Genet. Resour. Crop Evol., vol. 51, 2004, p.479-487
  • 22. Sambrook, J.& Fritsch, E.F.& Maniatis, T., "Molecular Cloning: A Laboratory Manual", 1989
  • 23. Weir, B.S.& Cockerham, C., "Estimating F-statistics for the analysis of population structure", Evolution, vol. 38, 1984, p.1358-1370
  • 24. Wrigley, G., "Date-palm (Phoenix dactylifera L.)", Smartt, J.& Simmonds, N.W. (Eds.), The Evolution Of Crop Plants, 1995, p.399-403
  • 25. Zehdi, S.& Trifi, M.& Billotte, N.& Marrakchi, M.& Pintaud, J.C., "Genetic diversity of Tunisian date palms (Phoenix dactylifera L.) revealed by nuclear microsatellite polymorphism", Hereditas, vol. 141, 2004, p.278-287
Identyfikator YADDA
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.