PL EN


Preferencje help
Widoczny [Schowaj] Abstrakt
Liczba wyników
Czasopismo
2012 | 57 | 2 |
Tytuł artykułu

Phylogenic analysis of Chinese Leishmania isolates based on small subunit ribosomal RNA (SSU rRNA) and 7 spliced leader RNA (7SL RNA)

Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
The leishmaniases are zoonotic diseases caused by protozoan parasites of the genus Leishmania. Leishmaniases are still endemic in China, especially in the west and northwest froniter regions. To revalue the preliminary phylogenetic results of Chinese Leishmania isolates, we amplified partial fragment of small subunit ribosomal RNA (SSU rRNA) and 7 spliced leader RNA (7SL RNA), then tested the phylogenetic relationships among Chinese Leishmania isolates and their relatives by analyzing SSU rRNA gene sequences and 7SL RNA gene sequences. 19 SSU RNA sequences and 9 7SL RNA sequences were obtained in our study, then analyzed with 42 SSU RNA sequences and 32 7SL RNA sequences retrieved from Genbank, respectively. In the Bayesian analysis of the SSU RNA gene, the isolate MHOM/CN/93/GS7 and the isolate IPHL/CN/77/XJ771 are members of Leishmania donovani complex, while the isolate MHOM/CN/84/JS1 clustered with Leishmania tropica. The other 11 Chinese Leishmania isolates (MHOM/CN/90/WC, MCAN/CN/90/SC11, MHOM/CN/80/XJ801, MHOM/CN/85/GS4, MHOM/CN/84/SD1, MCAN/CN/86/SC7, MHOM/CN/54/#3, MHOM/CN/83/GS2, MHOM/CN/90/SC10H2, MHOM/CN/89/GS6 and MHOM/CN/ 89/GS5) form an unclassified group, defined as Leishmania sp., and the most relative species to this group is L. tarentolae. In the Bayesian analysis of the 7SL RNA gene, 9 Chinese Leishmania isolates also formed an unclassified group with L. tarentolae, including canine isolate 10, MHOM/CN/85/GS4, MHOM/CN/84/SD1, MCAN/CN/86/SC7, MHOM/CN/54/#3, MHOM/ CN/83/GS2, MHOM/CN/90/SC10H2, MHOM/CN/89/GS6 and MHOM/CN/89/GS5. We concluded that: (1) Chinese Leishmania isolates are non-monophyly group; (2) an unclassified group may exist in China, and the most relative species to this group is L. tarentolae; (3) MHOM/CN/84/JS1, which was previously assigned as L. donovani, was most genetically related to L. tropica strain MHOM/SU/74/K27.
Wydawca
-
Czasopismo
Rocznik
Tom
57
Numer
2
Opis fizyczny
p.101-113,fig.,ref.
Twórcy
autor
  • Department of Parasitology, School of Preclinical and Forensic Medicine, Sichuan University, 17, 3rd Section of South Renmin Road, Chengdu 610041 Sichuan, China
autor
autor
autor
autor
autor
autor
Bibliografia
  • Ababneh F., Jermiin L.S., Ma C., et al. 2006. Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences. Bioinformatics, 22, 1225–1231. DOI: 10.1093/bioinformatics/btl064.
  • Akopyants N.S., Kimblin N., Secundino N., Patrick R., Peters N., Lawyer P., Dobson D.E., Beverley S.M., Sacks D.L. 2009. Demonstration of Genetic Exchange During Cyclical Development of Leishmania in the Sand Fly Vector. Science, 324, 265–268. DOI: 10.1126/science.1169464.
  • Aransay A.M., Scoulica E., Chaniotis B., Tselentis Y. 1999. Typing of sand flies from Greece and Cyprus by DNA polymorphism of 18S rRNA gene. Insect Molecular Biology, 8, 179–184. DOI: 10.1046/j.1365-2583.1999.820179.x.
  • Asato Y., Oshiro M., Myint C.K., et al. 2009. Phylogenic analysis of the genus Leishmania by cytochrome b gene sequencing. Experimental Parasitology, 121, 352–361. DOI: 10.1016/j.exppara.2008.12.013.
  • Bañuls A.L., Hide M., Prugnolle F. 2007. Leishmania and the leishmaniases: a parasite genetic update and advances in taxonomy, epidemiology and pathogenicity in humans. Advances in Parasitology, 64, 1–109. DOI: 10.1016/S0065-308X(06) 64001-3.
  • Barón S., Martín-Sánchez J., Gállego M., Morales-Yuste M., Boussaa S., Morillas Márquez F. 2008. Intraspecific variability (rDNA ITS and mtDNA Cyt b) of Phlebotomus sergenti in Spain and Morocco. Acta Tropica, 107, 259–267. DOI: 10.1016/j.actatropica.2008.07.003.
  • Barroso P.A., Marco J.D., Kato H., Tarama R., Rueda P., Cajal S.P., Basombrío M.A., Korenaga M., Taranto N.J., Hashiguchi Y. 2007. The identification of sandfly species, froman area of Argentina with endemic leishmaniasis, by the PCR-based analysis of the gene coding for 18S ribosomal RNA. Annals of Tropical Medicine and Parasitology, 101, 247–253. DOI: 10.1179/136485907X156988.
  • Baverstock P.R., Illana S., Christy P.E., Robinson B.S., Johnson A.M. 1989. srRNA Evolution and Phylogenetic Relationships of the Genus Naegleria (Protista: Rhizopoda). Molecular Biology and Evolution, 6, 243–257.
  • Botilde Y., Laurent T., Quispe Tintaya W., et al. 2006. Comparison of molecular markers for strain typing of Leishmania infantum. Infection Genetics and Evolution, 6, 440–446. DOI: 10.1016/j.meegid.2006.02.003.
  • Briones M.R., Nelson K., Beverley S.M., Affonso H.T., Camargo E.P., Floeter-Winter L.M. 1992. Leishmania tarentolae taxonomic relatedness inferred from phylogenetic analysis of the small subunit ribosomal RNA gene. Molecular and Biochemical Parasitology, 53, 121–127. DOI: 10.1016/0166-6851(92)90014-B.
  • Bu L.-Y., Hu X.-S., Jing B.-Q., Yi T.-L. 2000. Sequence analysis of SSU rDNA variable regions of Leishmania isolates from hilly foci and plain foci of China. Chinese Journal of Parasitology and Parasitic Disease, 18, 321–324 (in Chinese with English abstract).
  • Cao D.-P., Guo X.-G., Chen D.-L., Chen J.-P. 2011. Species delimitation and phylogenetic relationships of Chinese Leishmania isolates re-examined using kinetoplast cytochrome oxidase II gene sequences. Parasitology Research, 109, 163–173. DOI: 10.1007/s00436-010-2239-6.
  • Clark C.G., Martin D.S., Diamond L.S. 1995. Phylogenetic relationships among anuran trypanosomes as revealed by riboprinting. Journal of Eukaryotic Microbiology, 42, 92–96. DOI: 10.1111/j.1550-7408.1995.tb01546.x.
  • Croan D., Ellis J. 1996. Phylogenetic relationships between Leishmania, Viannia and Sauroleishmania inferred from comparison of a variable domain within the RNA polymerase II largest subunit gene. Molecular and Biochemical Parasitology, 79, 97–102. DOI: 10.1016/0166-6851(96)02629-1.
  • Croan D.G., Morrison D.A., Ellis J.T. 1997. Evolution of the genus Leishmania revealed by comparison of DNA and RNA polymerase gene sequences. Molecular and Biochemical Parasitology, 89, 149–159. DOI: 10.1016/S0166-6851(97)00111-4.
  • Desjeux P. 2004. Leishmaniasis: current situation and new perspectives. Comparative Immunology, Microbiology and Infectious Diseases, 27, 305–318. DOI: 10.1016/j.cimid.2004.03.004.
  • El Tai N.O., El Fari M., Mauricio I., Miles M.A., Oskam L., El Safi S.H., Presber W.H., Schönian G. 2001. Leishmania donovani: intraspecific polymorphisms of Sudanese isolates revealed by PCR-based analyses and DNA sequencing. Experimental Parasitology, 97, 35–44. DOI: 10.1006/expr.2001.4592.
  • Fernandes A.P., Nelson K., Beverley S.M. 1993. Evolution of nuclear ribosomal RNAs in kinetoplastid protozoa: perspectives on the age and origins of parasitism. Proceedings of the National Academy of Sciences of the United States of America, 90, 11608–11612. DOI: 10.1073/pnas.90.24.11608.
  • Fraga J., Montalvo A.M., Doncker S.D., Dujardin J.C., der Auwera G.V. 2010. Phylogeny of Leishmania species based on the heat-shock protein 70 gene. Infection, Genetics and Evolution, 10, 238–245. DOI: 10.1016/j.meegid.2009.11.007.
  • Fryauff D.J., Hanafi H.A., Klena J.D., Hoel D.F., Appawu M., Rogers W., Puplampu N., Odoom S., Kweku M., Koram K., Wilson M., Raczniak G., Boakye D. 2006. Short report: ITS1-DNA sequence confirmation of Leishmania major as a cause of cutaneous leishmaniasis from an outbreak focus in the HO district, southern Ghana. Tropical Medicine and Hygiene, 75, 502–504.
  • Grimaldi G., Kreutzer R.D., Hashiguchi Y., Gomez E.A., Mimory T., Tesh R.B. 1992. Description of Leishmania equatorensis sp. n. (Kinetoplastida, Trypanosomatidae), a new parasite infecting arboreal mammals in Ecuador. Memorias do Instituto Oswaldo Cruz, 87, 221–228. DOI: 10.1590/S0074-02761992000200009.
  • Guan L.-R., Yang Y.-Q., Ren H.-Y., Shen W.-X. 1995. Discovery and study of Leishmania turanica for the first time in China. Bulletin of World Health Organ, 69, 595–601.
  • Ho J.W.K., Adams C.E., Lew J.B., et al. 2006. SeqVis: visualization of compositional heterogeneity in large alignments of nucleotides. Bioinformatics, 22, 2162–2163. DOI: 10.1093/bioinformatics/btl283.
  • Hu X.-S., Bu L., Ma Y., Wang Y., Jing B., Yi T. 2002. Difference in DNA sequences in SSU rDNA variable regions among pathogens isolated from different epidemi foci of visceral leishmaniasis in China. Chinese Medical Journal (Engl.), 115, 1457–1459.
  • Hu X.-S., Lin F.-Q., Kan B., et al. 1992. Identification of Leishmania donovani isolates from different kala-azar foci in China by kDNA hybridization. Chinese Medical Sciences Journal, 7, 63–66 (in Chinese with English abstract).
  • Hughes A.L., Piontkivska H. 2003. Phylogeny of Trypanosomatidae and Bodonidae (Kinetoplastida) based on 18S rRNA: evi dence for paraphyly of Trypanosoma and six other genera. Molecular Biology and Evolution, 20, 644–652. DOI: 10.1093/molbev/msg062.
  • Ibrahim M.E., Barker D.C. 2001. The origin and evolution of the Leishmania donovani complex as inferred from a mitochondrial cytochrome oxidase II gene sequence. Infection, Genetics and Evolution, 1, 61–68. DOI: 10.1016/S1567-1348(01)00009-0.
  • Johnson A.M., Baverstock P.R. 1989. Rapid ribosomal RNA sequencing and the phylogenetic analysis of protists. Parasitology Today, 5, 102–108. DOI: 10.1016/0169-4758(89) 90046-X.
  • Kuhls K., Mauricio I.L., Pratlong F., Presber W., Schönian G. 2005. Analysis of ribosomal DNA internal transcribed spacer sequences of the Leishmania donovani complex. Microbes Infect, 7, 1224–1234. DOI: 10.1016/j.micinf.2005.04.009.
  • Kuwahara K., Kato H., Gomez E.A., et al. 2009. Genetic diversity of ribosomal RNA internal transcribed spacer sequences in Lutzomyia species from areas endemic for New World cutaneous leishmaniasis. Acta Tropica, 112, 131–136. DOI: 10.1016/j.acta-tropica.2009.07.010.
  • Landweber L.F., Gilbert W. 1994. Phylogenetic analysis of RNA editing: A primitive genetic phenomenon. Proceedings of the National Academy of Sciences of the United States of America, 91, 918–921. DOI: 10.1073/pnas.91.3.918.
  • Looker D., Miller L.A., Elwood H.J., Stickel S., Sogin M.L. 1988. Primary structure of the Leishmania donovani small subunit ribosomal RNA coding region. Nucleic Acids Research, 16, 7198. DOI: 10.1093/nar/16.14.7198.
  • Lu D.-M., Hu X.-S., Qiao Z.-D. 2001. Analysis of Leishmania species and strains from China by RAPD technique. Chinese Journal of Parasitology and Parasitic Disease, 19, 290–293 (in Chinese with English abstract).
  • Lu H.-G., Hu X.-S. 1988. Identification of Leishmania by dot blot hybridization with photobiotin labelled kDNA. Journal of West China University of Medical Science, 19, 222–225 (in Chinese with English abstract).
  • Lu H.-G., Zhong L., Guan L.-R., Qu J.-Q., Hu X.-S., Chai J.-C., Xu Z.-B., Wang C.-T., Chang K.-P. 1994. Separation of Chinese Leishmania isolates into five genotypes by kinetoplast and chromosomal DNA heterogeneity. American Journal of Tropical Medicine and Hygiene, 50, 763–770.
  • Lukeš J., Mauricio I. L., Schönian G., et al. 2007. Evolutionary and geographical history of the Leishmania donovani complex with a revision of current taxonomy. Proceedings of the National Academy of Sciences of the United States of America, 104, 9375–9380. DOI: 10.1073/pnas.0703678104.
  • Luyo-Acero G.E., Uezato H., Oshiro M., Takei K., Katakara K., Gomez-Landires E., Hashiguchi Y., Nonakas S. 2004. Sequence variation of the Cytochrome b gene of various human infecting members of the genus Leishmania and their phylogeny. Parasitology, 128, 483–491. DOI: 10.1017/S0031182004004792.
  • Marche S., Roth C., Philippe E., Dollet M., Baltz T. 1995. Characterisation and detection of plant trypanosomatids by sequence analysis of the small subunit ribosomal RNA gene. Molecular and Biochemical Parasitology, 71, 15–26. DOI: 10.1016/ 0166-6851(95)00029-Z.
  • Marcili A., Lima L., Valente V.C., et al. 2009. Comparative phylogeography of Trypanosoma cruzi TCIIc: New hosts, association with terrestrial ecotopes, and spatial clustering. Infection, Genetics and Evolution, 9, 1265–1274. DOI: 10.1016/j.meegid.2009.07.003.
  • Maslov D.A., Lukes J., Jirku M., Simpson L. 1996. Phylogeny of trypanosomes as inferred from the small and large subunit rRNAs: implications for the evolution of parasitism in the trypanosomatid protozoa. Molecular and Biochemical Parasitology, 75, 197–205. DOI: 10.1016/0166-6851(95)02526-X.
  • Maslov D.A., Simpson L. 1995. Evolution of Parasitism in Kinetoplastid Protozoa. Parasitology Today, 11, 30–32. DOI: 10.1016/0169-4758(95)80106-5.
  • Noyes H.A., Arana B.A., Chance M.L., Wingon R. 1997. The Leishmania hertigi (Kinetoplastida; Trypanosomatidae) Complex and the Lizard Leishmania: Their Classification and Evidence for a Neotropical Origin of the Leishmania-Endotrypanum Clade. Journal of Eukaryotic Microbiology, 44, 511–517. DOI: 10.1111/j.1550-7408.1997.tb05732.x.
  • Noyes H.A., Chance M.L., Dedet J.P. 2000. A novel Leishmania from Martinique. School of Biological Sciences, University of Liverpool, Crown St, Liverpool, Merseyside L69 7ZD, UK.
  • Noyes H.A., Camps A.P., Chance M.L. 1996. Leishmania herreri (Kinetoplastida: Trypanosomatidae) is more closely related to Endotrypanum (Kinetoplastida: Trypanosomatidae) than to Leishmania. Molecular and Biochemical Parasitology, 80, 119–123. DOI: 10.1016/0166-6851(96)02679-5.
  • Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C., Dumon H., Auilici M. 1995. Phylogenetic relationships between Old World Leishmania strains revealed by analysis of a repetitive DNA sequence. Molecular and Biochemical Parasitology, 73, 249–252. DOI: 10.1016/0166-6851(95)00097-K.
  • Posada D., Crandall K.A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817–818. DOI: 10.1093/bioinformatics/14.9.817.
  • Raymond F., Boisvert S., Roy G., Ritt J.F., Legare D., Isnard A., Stanke M., Olivier M., Tremblay J.M., Papadopoulou B., Ouellette M., Corbeil J. 2011. Genome sequencing of the lizard parasite Leishmania tarentolae reveals loss of genes associated to the incracellular stage of human pathogenic species. Nucleic Acids Research, 2011, 1–17. DOI: 10.1093/nar/gkr834.
  • Ronquist F., Huelsenbeck J.P. 2003. MrBayes 3: Bayesian phylogenetic inferrence under mixed models. Bioinformatics, 19, 1572–1574. DOI: 10.1093/bioinformatics/btg180.
  • Sambrook J., Russell D.W. 2001. Molecular cloning: a laboratory manual (3rd ed.) Cold Spring Harbor Laboratory Press, New York.
  • Schönian G., Mauricio I., Cupolillo E. 2010. Is it time to revise the nomenclature of Leishmania? Trends in Parasitology, 26, 466–469. DOI: 10.1016/j.pt.2010.06.013.
  • Slowinski J.B., Page R.D.M. 1999. How should species phylogenies be inferred from sequence data? Systematic Biology, 48, 814–825.
  • Snyder M.J., Maddison D.R. 1997. Molecular phylogeny of glutathione-S-transferases. DNA and Cell Biology, 16, 1373–1384. DOI: 10.1089/dna.1997.16.1373.
  • Sogin M.L., Elwood H.J., Gunderson J.H. 1986. Evolutionary diversity of eukaryotic small subunit rRNA gene. Proceedings of the National Academy of Sciences of the United States of America, 83, 1383–1387. DOI: 10.1073/pnas.83.5.1383.
  • Stevens J.R., Noyes H.A., Schofield C.J., Gibson W. 2001. The molecular evolution of Trypanosomatidae. Advances in Parasitology, 48, 1–56. DOI: 10.1016/S0065-308X(01)48003-1.
  • Suankratay C., Suwanpimolkul G., Wilde H., Siriyasatien P. 2010. Autochthonous visceral leishmaniasis in a human immunodeficiency virus (HIV)-infected patient: the first in Thailand and review of the literature. Tropical Medicine and Hygiene, 82, 4–8. DOI: 10.4269/ajtmh.2010.09-0434.
  • Swofford D.L. 2002. PAUP*. Phylogenetic analysis using parsimony (* and other methods), version 4. Sinauer, Sunderland, MA.
  • Tamura K., Dudley J., Nei M., Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596–1599. DOI: 10.1093/molbev/msm092.
  • Thompson J.D., Gibson T.J., Plewniak F., et al. 1997. The Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876–4882. DOI: 10.1093/nar/25.24.4876.
  • Tian Y., Chen J.-P. 2005. Cloning and sequence analysis of ITS gene of Leishmania donovani isolates from different epidemic Foci in China. Journal of Biomedical Engineering, 22, 540–544 (in Chinese with English abstract).
  • Trainor K.E., Porter B.F., Logan K.S., Hoffman R.J., Snowden K.F. 2010. Eight cases feline cutaneous leishmaniasis in Texas. Veterinary Pathology, 47, 1076–1081. DOI: 10.1177/0300985810382094.
  • Uliana S.R.B., Affonso M.H.T., Camargo E.P., Floeter-Winter L.M. 1991. Leishmania: genus identification based on a specific sequence of the 18S ribosomal RNA sequence. Experimental Parasitology, 72, 157–163. DOI: 10.1016/0014-4894(91)90 133-H.
  • Van Eys G.J., Schoone G.J., Kroon N.C., et al. 1992. Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites. Molecular and Biochemical Parasitology, 51, 133–142.
  • Villinski J.T., Klena J.D., Abbassya M., Hoel D.F., Puplampuc N., Mechta S., Boakye D., Raczniak G. 2008. Evidence for a new species of Leishmania associated with a focal disease outbreak in Ghana. Diagnostic Microbiology and Infectious Disease, 60, 323–327. DOI: 10.1016/j.diagmicrobio.2007.09.013.
  • Waters A.P., McCutchan T.F. 1990. Ribosomal RNA: nature’s own polymerase amplified target for diagnosis. Parasitology Today, 6, 56–60. DOI: 10.1016/0169-4758(90)90071-B.
  • Xu Z.-B., Le Blancq S., Evans D.A., Peters W. 1984. The characterization by isoenzyme electrophoresis of Leishmania isolated in the People’s Republic of China. Transaction of the Royal Society of Tropical Medicine and Hygiene, 78, 689–693.
  • Yang B.-B., Guo X.-G., Hu X.-S., Zhang J.-G., Liao L., Chen D.-L., Chen J.-P. 2010. Species discrimination and phylogenetic inference of 17 Chinese Leishmania isolates based on internal transcribed spacer 1 (ITS1) sequences. Parasitology Research, 107, 1049–1065. DOI: 10.1007/s00436-010-1969-9.
  • Zheng X.-L., Hu X.-S., Chen J.-P. 1999. Analysis of kinetoplast DNA of Leishmania isolates in China by PCR-SSCP. Chinese Journal of Parasitology and Parasitic Disease, 17, 346–349 (in Chinese with English abstract).
  • Zelazny A.M., Fedorko D.P., Li L., Neva A.F., Fischer S.H. 2005. Evaluation of 7SL RNA gene sequence for the identification of Leishmania spp. American Journal of Tropical Medicine and Hygiene, 72, 415–420.
Typ dokumentu
Bibliografia
Identyfikatory
Identyfikator YADDA
bwmeta1.element.agro-18abf34a-a709-41c9-b9a8-5d43516b48cc
JavaScript jest wyłączony w Twojej przeglądarce internetowej. Włącz go, a następnie odśwież stronę, aby móc w pełni z niej korzystać.