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Czasopismo
2013 | 11 | 3 | 357-362
Tytuł artykułu

A Lennard-Jones-like perspective on first order transitions in biological helices

Treść / Zawartość
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
Helical structures with Lennard-Jones self-interactions are studied for optimal conformations. For this purpose, their self-energy is analyzed for extrema with respect to the geometric parameters of the helices. It is found that Lennard-Jones helices exhibit a first order phase transition from a state with large curvature of the helical backbone to one with a small curvature. I.e. from a dense helix to an extended helix. A transition from one helical structure to another is a phenomenon known to take place in self-assembling helices formed in multicomponent solutions with cholesterol.
Słowa kluczowe
Wydawca

Czasopismo
Rocznik
Tom
11
Numer
3
Strony
357-362
Opis fizyczny
Daty
wydano
2013-03-01
online
2013-03-28
Twórcy
autor
  • DTU Nanotech, Ørsteds Plads, Technical University of Denmark, DK-2800, Kongens Lyngby, Denmark, jabo@nanotech.dtu.dk
Bibliografia
  • [1] B. Khaykovich, C. Hossain, J. J. McManus, A. Lomakin, D. E. Moncton, P. Natl. Acad. Sci. USA 104, 9656 (2007) http://dx.doi.org/10.1073/pnas.0702967104[Crossref]
  • [2] B. Smith, Y. V. Zastavker, G. B. Benedek, Phys. Rev. Lett. 87, 278101 (2001) http://dx.doi.org/10.1103/PhysRevLett.87.278101[Crossref]
  • [3] M. P. Taylor, S. R. Adhikari, J. Chem. Phys. 135, 044903 (2011) http://dx.doi.org/10.1063/1.3614500[Crossref]
  • [4] E. Sanz, C. McBride, C. Vega, Mol. Phys. 101, 2241 (2003) http://dx.doi.org/10.1080/0026897031000112424[Crossref]
  • [5] J. N. Israelachvili, Intermolecular and Surface Forces (Academic Press, London 1992)
  • [6] D. F. Evans, H. Wennerström, The Colloidal Domain: Where Physics, Chemistry, Biology and Technology Meet, 2nd Edition (Wiley, New York, 1999)
  • [7] B. V. Derjaguin, Kolloid Z. 69, 155 (1934) http://dx.doi.org/10.1007/BF01433225[Crossref]
  • [8] H. C. Hamaker, Physica 4, 1058 (1937) http://dx.doi.org/10.1016/S0031-8914(37)80203-7[Crossref]
  • [9] M. J. Sparnaay, Recueil 78, 680 (1959) http://dx.doi.org/10.1002/recl.19590780908[Crossref]
  • [10] I. E. Dzyaloshinskii, E. M. Lifshitz, L. P. Pitaevskii, Sov. Phys. Uspekhi. 4, 153 (1961) http://dx.doi.org/10.1070/PU1961v004n02ABEH003330[Crossref]
  • [11] N. G. van Kampen, B. R. A. Nijboer, K. Schram., Phys. Lett. A 26, 307 (1968) http://dx.doi.org/10.1016/0375-9601(68)90665-8[Crossref]
  • [12] B. W. Ninham, V. A. Parsegian, Biophys. J. 10, 646 (1970) http://dx.doi.org/10.1016/S0006-3495(70)86326-3[Crossref]
  • [13] D. Langbein, Z. Phys. B Con. Mat. 15, 61 (1972)
  • [14] V. A. Parsegian, G. H. Weiss, J. Colloid Interf. Sci. 81, 285 (1981) http://dx.doi.org/10.1016/0021-9797(81)90325-8[Crossref]
  • [15] M. J. Vold, J. Colloid Interf. Sci. 16, 1 (1961) http://dx.doi.org/10.1016/0095-8522(61)90057-5[Crossref]
  • [16] Y. Gu, D. Li, J. Colloid Interf. Sci. 217, 60 (1999) http://dx.doi.org/10.1006/jcis.1999.6349[Crossref]
  • [17] R. Tadmor, J. Phys.-Condens. Mat. 13, L195 (2001) http://dx.doi.org/10.1088/0953-8984/13/9/101[Crossref]
  • [18] H. Ohshima, A. Hyono, J. Colloid Interf. Sci. 332, 251 (2009) http://dx.doi.org/10.1016/j.jcis.2008.11.073[Crossref]
  • [19] A. Kerdye, L. Galatry, Mol. Phys. 55, 1383 (1985) http://dx.doi.org/10.1080/00268978500102081[Crossref]
  • [20] A. G. Cherstvy, R. G. Winkler, J. Chem. Phys. 120, 9394 (2004) http://dx.doi.org/10.1063/1.1707015[Crossref]
  • [21] A. G. Cherstvy, J. Chem. Phys. 123, 116101 (2005) http://dx.doi.org/10.1063/1.2036990[Crossref]
  • [22] L. D. Landau, E. M. Lifshitz, Statistical Physics (Pergamon Press, New York, 1970)
  • [23] I. I. Potemkin, N. N. Oskolkov, A. R. Khokhlov, P. Reineker, Phys. Rev. E 72, 021804 (2005) http://dx.doi.org/10.1103/PhysRevE.72.021804[Crossref]
  • [24] N. N. Oskolkov, P. Linse, I. I. Potemkin, A. R. Khokhlov, J. Phys. Chem. B 115, 422 (2011) http://dx.doi.org/10.1021/jp108461z[Crossref]
  • [25] A. Yu. Grosberg, A. R. Khokhlov, Statistical Physics of Macromolecules (AIP Press, New York, 1994)
  • [26] M. Rubinstein, R. H. Colby, Polymer Physics (Oxford University Press, New York, 2003)
  • [27] M. Doi, S. F. Edwards, The Theory of Polymer Dynamics (Clarendon Press, Oxford, 1986)
  • [28] G. T. Kilosanidze, A. S. Kutsenko, N. G. Esipova, V. G. Tumanyan, Protein Sci. 13 351 (2004) http://dx.doi.org/10.1110/ps.03429104[Crossref]
  • [29] J. A. Schellman, J. Phys. Chem. 62, 1485 (1958) http://dx.doi.org/10.1021/j150570a005[Crossref]
  • [30] D. J. Jacobs, G. G. Wood, Biopolymers 75, 1 (2004) http://dx.doi.org/10.1002/bip.20102[Crossref]
  • [31] A. Pastore et al., J. Am. Chem. Soc. 129, 5374 (2007) http://dx.doi.org/10.1021/ja0714538[Crossref]
  • [32] T. Ooi, M. Oobatake, P. Natl. Acad. Sci. USA 88, 2859 (1991) http://dx.doi.org/10.1073/pnas.88.7.2859[Crossref]
  • [33] M. E. Holtzer et al., Biophys. J. 78, 2037 (2000) http://dx.doi.org/10.1016/S0006-3495(00)76751-8[Crossref]
  • [34] M. Davidovic, C. Mattea, J. Qvist, B. Halle, J. Am. Chem. Soc. 131, 1025 (2009) http://dx.doi.org/10.1021/ja8056419[Crossref]
  • [35] P. L. Privalov, S. J. Gill, Adv. Protein Chem. 39, 191 (1988) http://dx.doi.org/10.1016/S0065-3233(08)60377-0[Crossref]
  • [36] J. Bohr, Int. J. Quantum Chem. 84, 249 (2001) http://dx.doi.org/10.1002/qua.1327[Crossref]
Typ dokumentu
Bibliografia
Identyfikatory
Identyfikator YADDA
bwmeta1.element.-psjd-doi-10_2478_s11534-013-0184-6
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