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2010 | 8 | 6 | 883-892
Tytuł artykułu

Simulation of dissociation of DNA duplexes attached to the surface

Treść / Zawartość
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
We present Monte Carlo simulations of dissociation of duplexes formed of complementary single-stranded DNAs with one of the strands attached to the surface. To describe the transition from the bound state to the unbound state of two strands located nearby, we use a lattice model taking DNA base-pair interactions and comformational changes into account. The results obtained are employed as a basis for a more coarse-grained model including strand backward association and diffusion resulting in complete dissociation. The distribution of the dissociation time is found to be exponential. This finding indicates that the non-exponential kinetic features observed in the corresponding experiments seem to be related to extrinsic factors, e.g., to the surface heterogeneity.
Wydawca
Czasopismo
Rocznik
Tom
8
Numer
6
Strony
883-892
Opis fizyczny
Daty
wydano
2010-12-01
online
2010-09-05
Twórcy
  • Division of Biological Physics, Department of Applied Physics, Chalmers University of Technology, S-41296, Göteborg, Sweden
  • Division of Biological Physics, Department of Applied Physics, Chalmers University of Technology, S-41296, Göteborg, Sweden
Bibliografia
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Typ dokumentu
Bibliografia
Identyfikatory
Identyfikator YADDA
bwmeta1.element.-psjd-doi-10_2478_s11534-010-0012-1
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