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Tytuł artykułu

Peptidomics in veterinary science: focus on bovineparatuberculosis

Treść / Zawartość
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
Bacterial infections represent a serious burden both for animal production and human health (zoonosis). Faster and more reliable diagnosis are mandatory in order to avoid economic losses and antibiotics misuse. The development of new potential diagnostic strategies for the immunodetection of pathogens is closely linked to the discovery of small polypeptides with immunogenic or immunoreactive activity. The candidate peptides used for this purpose must have several properties principally represented by their specificity and their location in the bacterial cell. Both proteomics, peptidomics and bioinformatics represent powerful complementary tools to discover specific immunoreactive peptides useful for diagnosis or vaccine. Peptidomics of Mycobacterium avium subsp. paratuberculosis (MAP) represents a good example of the potential of this discovery-phase. This review reports a comprehensive update of the current scientific knowledge about proteins and peptides of MAP with already documented humoral response. These findings, together with bioinformatics tools available, could be extremely useful to design a better strategy for subclinical bovine paratuberculosis diagnosis. The knowledge provided also represents a reliable example on the workflow to be followed in the direction of the diagnosis of other diseases through a peptidomic approach.
Wydawca

Czasopismo
Rocznik
Tom
2
Numer
1
Opis fizyczny
Daty
otrzymano
2014-10-03
zaakceptowano
2014-11-30
online
2015-03-30
Twórcy
  • Dipartimento di Scienze
    Veterinarie e Sanità Pubblica, Università degli studi di Milano,
    Milano, Italy
  • Dipartimento di Scienze
    Veterinarie e Sanità Pubblica, Università degli studi di Milano,
    Milano, Italy
  • Fondazione Santa Lucia – IRCCS, Rome, Italy
  • Dipartimento di medicina sperimentale e chirurgia,
    Università degli studi di Roma TorVergata, Roma, Italy
  • Dipartimento di Scienze
    Veterinarie e Sanità Pubblica, Università degli studi di Milano,
    Milano, Italy
  • Dipartimento di Scienze
    Veterinarie e Sanità Pubblica, Università degli studi di Milano,
    Milano, Italy
  • Dipartimento di Scienze
    Veterinarie e Sanità Pubblica, Università degli studi di Milano,
    Milano, Italy
  • Istituto Sperimentale Italiano L. Spallanzani, Milano,
    Ital
Bibliografia
  • [1] Ansari, H. R., Raghava, G. P., Identification of conformationalB-cell Epitopes in an antigen from its primary sequence.Immunome research 2010, 6, 6.[Crossref]
  • [2] Purcell, A. W., McCluskey, J., Rossjohn, J., More than one reasonto rethink the use of peptides in vaccine design. NatureReviews Drug Discovery 2007, 6, 404-414.[Crossref]
  • [3] Carter, J. M., Loomis‐Price, L., B cell epitope mapping usingsynthetic peptides. Current Protocols in Immunology 2004,9.4. 1-9.4. 23.
  • [4] Piras, C., Soggiu, A., Bonizzi, L., Greco, V., et al., Identificationof immunoreactive proteins of Mycobacterium avium subsp.paratuberculosis. PROTEOMICS 2014, n/a-n/a.
  • [5] Sousa, R., Osório, H., Duque, L., Ribeiro, H., et al., Identificationof Plantago lanceolata Pollen Allergens Using an ImmunoproteomicApproach. J Investig Allergol Clin Immunol 2014, 24,177-183.
  • [6] Castro-Borges, W., Dowle, A., Curwen, R. S., Thomas-Oates, J.,Wilson, R. A., Enzymatic shaving of the tegument surface oflive schistosomes for proteomic analysis: a rational approachto select vaccine candidates. PLoS neglected tropical diseases2011, 5, e993.
  • [7] Turk, N., Milas, Z., Mojcec, V., Ruzic‐Sabljic, E., et al., Molecularanalysis of Leptospira spp. isolated from humans by restrictionfragment length polymorphism, real‐time PCR and pulsed‐fieldgel electrophoresis. FEMS microbiology letters 2009, 300,174-179.
  • [8] Gilchrist, M. J., Greko, C., Wallinga, D. B., Beran, G. W., et al.,The potential role of concentrated animal feeding operationsin infectious disease epidemics and antibiotic resistance.Environmental health perspectives 2007, 115, 313.
  • [9] Turk, R., Piras, C., Kovačić, M., Samardžija, M., et al., Proteomicsof inflammatory and oxidative stress response in cows withsubclinical and clinical mastitis. Journal of proteomics 2012,75, 4412-4428.
  • [10] Hermon-Taylor, J., Mycobacterium avium subspecies paratuberculosis,Crohn’s disease and the Doomsday scenario. Gutpathogens 2009, 1, 1-6.
  • [11] Manning, E., Collins, M., Mycobacterium avium subsp. paratuberculosis:pathogen, pathogenesis and diagnosis. Revuescientifique et technique (International Office of Epizootics)2001, 20, 133.
  • [12] Behr, M. A., Collins, D. M., Paratuberculosis: organism, disease,control, CABI 2010.
  • [13] Piras, C., Soggiu, A., Greco, V., Cassinotti, A., et al., Serumprotein profiling of early and advanced stage Crohn’s disease.EuPA Open Proteomics 2014, 3, 48-59.[Crossref]
  • [14] Cucino, C., Sonnenberg, A., Occupational mortality frominflammatory bowel disease in the United States 1991–1996.The American journal of gastroenterology 2001, 96, 1101-1105.
  • [15] Hermon-Taylor, J., El-Zaatari, F., The Mycobacterium aviumsubspecies paratuberculosis (MAP) problem, and its relation tothe causation of Crohn’s disease. Pathogenic Mycobacteria inWater 2004.
  • [16] Fridriksdottir, V., Gunnarsson, E., Sigurdarson, S.,Gudmundsdottir, K., Paratuberculosis in Iceland: epidemiologyand control measures, past and present. Veterinarymicrobiology 2000, 77, 263-267.
  • [17] Naser, S. A., Ghobrial, G., Romero, C., Valentine, J. F., Culture ofMycobacterium avium subspecies paratuberculosis from theblood of patients with Crohn‘s disease. The Lancet
  • [18] Bentley, R. W., Keenan, J. I., Gearry, R. B., Kennedy, M. A., etal., Incidence of Mycobacterium avium subspecies paratuberculosisin a population-based cohort of patients with Crohn’sdisease and control subjects. The American journal of gastroenterology2008, 103, 1168-1172.[Crossref]
  • [19] Kirkwood, C. D., Wagner, J., Boniface, K., Vaughan, J., et al.,Mycobacterium avium subspecies paratuberculosis in childrenwith early‐onset Crohn’s disease. Inflammatory bowel diseases2009, 15, 1643-1655.
  • [20] Feller, M., Huwiler, K., Stephan, R., Altpeter, E., et al.,Mycobacterium avium subspecies paratuberculosis andCrohn’s disease: a systematic review and meta-analysis. TheLancet infectious diseases 2007, 7, 607-613.
  • [21] Nagabhushanam, V., Praszkier, J., Cheers, C., Molecular andimmunological characterization of Mycobacterium avium 65kDa heat shock protein (Hsp65). Immunology and cell biology2001, 79, 454-461.
  • [22] Dow, C. T., M. paratuberculosis Heat Shock Protein 65 andHuman Diseases: Bridging Infection and Autoimmunity.Autoimmune Diseases 2012, 2012.
  • [23] Agrawal, G., Borody, T. J., Chamberlin, W., ‘Global warming’toMycobacterium avium subspecies paratuberculosis. Futuremicrobiology 2014, 9, 829-832.
  • [24] Collins, M. T., Diagnosis of paratuberculosis. The Veterinaryclinics of North America. Food animal practice 1996, 12,357-371.
  • [25] Whitlock, R., Wells, S., Sweeney, R. W., Van Tiem, J., ELISA andfecal culture for paratuberculosis (Johne’s disease): sensitivityand specificity of each method. Veterinary microbiology 2000,77, 387-398.
  • [26] Kalis, C., Collins, M., Hesselink, J., Barkema, H., Specificity oftwo tests for the early diagnosis of bovine paratuberculosisbased on cell-mediated immunity: the Johnin skin test and thegamma interferon assay. Veterinary microbiology 2003, 97,73-86.
  • [27] Lavers, C. J., Barkema, H. W., Dohoo, I. R., McKenna, S. L.B., Keefe, G. P., Evaluation of milk ELISA fordetection of Mycobacterium avium subspecies paratuberculosis indairyherds and association with within-herd prevalence. Journal ofDairy Science 2014, 97, 299-309.[Crossref]
  • [28] He, Z., De Buck, J., Localization of proteins in the cell wallof Mycobacterium avium subsp. paratuberculosis K10 byproteomic analysis. Proteome Sci 2010, 8, 21.[Crossref]
  • [29] Mikkelsen, H., Aagaard, C., Nielsen, S. S., Jungersen, G., Reviewof Mycobacterium avium subsp. paratuberculosis antigencandidates with diagnostic potential. Veterinary microbiology2011, 152, 1-20.
  • [30] Willemsen, P. T., Westerveen, J., Dinkla, A., Bakker, D., etal., Secreted antigens of Mycobacterium avium subspeciesparatuberculosis as prominent immune targets. Veterinarymicrobiology 2006, 114, 337-344.
  • [31] Gumber, S., Taylor, D. L., Whittington, R. J., Evaluation of theimmunogenicity of recombinant stress-associated proteinsduring Mycobacterium avium subsp. paratuberculosisinfection: Implications for pathogenesis and diagnosis.Veterinary microbiology 2009, 137, 290-296.
  • [32] Paustian, M. L., Amonsin, A., Kapur, V., Bannantine, J. P.,Characterization of novel coding sequences specific toMycobacterium avium subsp. paratuberculosis: implicationsfor diagnosis of Johne’s disease. Journal of clinicalmicrobiology 2004, 42, 2675-2681.
  • [33] Cho, D., Sung, N., Collins, M. T., Identification of proteinsof potential diagnostic value for bovine paratuberculosis.Proteomics 2006, 6, 5785-5794.[Crossref]
  • [34] Cho, D., Collins, M. T., Comparison of the proteosomes andantigenicities of secreted and cellular proteins producedby Mycobacterium paratuberculosis. Clinical and vaccineimmunology 2006, 13, 1155-1161.
  • [35] Cho, D., Shin, S.-J., Talaat, A. M., Collins, M. T., Cloning,expression, purification and serodiagnostic evaluation offourteen Mycobacterium paratuberculosis proteins. Proteinexpression and purification 2007, 53, 411-420.
  • [36] Liu, X., Feng, Z., Harris, N. B., Cirillo, J. D., et al., Identificationof a secreted superoxide dismutase in Mycobacterium aviumssp. paratuberculosis. FEMS microbiology letters 2001, 202,233-238.
  • [37] Li, L., Munir, S., Bannantine, J. P., Sreevatsan, S., et al., Rapidexpression of Mycobacterium avium subsp. paratuberculosisrecombinant proteins for antigen discovery. Clinical andVaccine Immunology 2007, 14, 102-105.[Crossref]
  • [38] Dheenadhayalan, V., Shin, K.-S., Chang, C.-F., Chang, C.-D.,et al., Cloning and characterization of the genes coding forantigen 85A, 85B and 85C of Mycobacterium avium subsp.paratuberculosis. Mitochondrial DNA 2002, 13, 287-294.
  • [39] Shin, S. J., McDonough, S. P., Original Articles: Comparativeantibody response of five recombinant antigens in relatedto bacterial shedding levels and development of serologicaldiagnosis based on 35 kDa antigen for Mycobacterium aviumsubsp. paratuberculosis. Journal of veterinary science 2004, 5,111-117.
  • [40] Bannantine, J. P., Bayles, D. O., Waters, W. R., Palmer, M. V.,et al., Early antibody response against Mycobacterium aviumsubspecies paratuberculosis antigens in subclinical cattle.Proteome Sci 2008, 6.
  • [41] Bannantine, J. P., Paustian, M. L., Waters, W. R., Stabel, J. R.,et al., Profiling bovine antibody responses to Mycobacteriumavium subsp. paratuberculosis infection by using proteinarrays. Infection and immunity 2008, 76, 739-749.
  • [42] Bannantine, J. P., Rosu, V., Zanetti, S., Rocca, S., et al., Antigenicprofiles of recombinant proteins from Mycobacterium aviumsubsp. paratuberculosis in sheep with Johne’s disease.Veterinary immunology and immunopathology 2008, 122,116-125.
  • [43] Bannantine, J. P., Waters, W., Stabel, J. R., Palmer, M. V., etal., Development and use of a partial Mycobacterium aviumsubspecies paratuberculosis protein array. Proteomics 2008,8, 463-474.[Crossref]
  • [44] Newton, V., McKenna, S. L., De Buck, J., Presence of PPEproteins in Mycobacterium avium subsp. paratuberculosisisolates and their immunogenicity in cattle. Veterinarymicrobiology 2009, 135, 394-400.
  • [45] Cobb, A. J., Frothingham, R., The GroES antigens ofMycobacterium avium and Mycobacterium paratuberculosis.Veterinary microbiology 1999, 67, 31-35.
  • [46] Hughes, V., Bannantine, J. P., Denham, S., Smith, S., et al.,Immunogenicity of proteome-determined Mycobacteriumavium subsp. paratuberculosis-specific proteins in sheep withparatuberculosis. Clinical and vaccine immunology 2008, 15,1824-1833.
  • [47] Bannantine, J. P., Radosevich, T. J., Stabel, J. R., Sreevatsan,S., et al., Development and characterization of monoclonalantibodies and aptamers against major antigens ofMycobacterium avium subsp. paratuberculosis. Clinical andVaccine Immunology 2007, 14, 518-526.[Crossref]
  • [48] Leroy, B., Viart, S., Trinchero, N., Roupie, V., et al., Use ofMycobacterium avium subsp. paratuberculosis specific codingsequences for serodiagnosis of bovine paratuberculosis.Veterinary microbiology 2009, 135, 313-319.
  • [49] Facciuolo, A., Kelton, D. F., Mutharia, L. M., Novel secretedantigens of Mycobacterium paratuberculosis as serodiagnosticbiomarkers for Johne’s disease in cattle. Clinical and VaccineImmunology 2013, 20, 1783-1791.[Crossref]
  • [50] Gurung, R., Purdie, A., Whittington, R., Begg, D., Cellular andhumoral immune responses in sheep vaccinated with candidateantigens MAP2698c and MAP3567 from Mycobacterium aviumsubspecies paratuberculosis. Name: Frontiers in Cellular andInfection Microbiology 2014, 4, 93.
  • [51] Mon, M., #237, Laura, a., Viale, M., et al., Search forMycobacterium avium Subspecies paratuberculosis Antigensfor the Diagnosis of Paratuberculosis. Veterinary MedicineInternational 2012, 2012, 9.
  • [52] Gioffré, A., Caimi, K., Zumárraga, M. J., Meikle, V., et al., Lpp34,a novel putative lipoprotein from Mycobacterium avium subsp.paratuberculosis. Journal of Veterinary Medicine, Series B2006, 53, 34-41.
  • [53] Wu, C.-w., Schmoller, S. K., Bannantine, J. P., Eckstein, T. M.,et al., A novel cell wall lipopeptide is important for biofilmformation and pathogenicity of Mycobacterium aviumsubspecies paratuberculosis. Microbial pathogenesis 2009,46, 222-230.
  • [54] Bannantine, J. P., Stabel, J. R., Lamont, E. A., Briggs, R. E.,Sreevatsan, S., Monoclonal antibodies bind a SNP-sensitiveepitope that is present uniquely in Mycobacterium aviumsubspecies paratuberculosis. Frontiers in microbiology 2011, 2.
  • [55] Gurung, R. B., Begg, D. J., Purdie, A. C., Bach, H., Whittington,R. J., Immunoreactivity of protein tyrosine phosphatase A (PtpA) in sera from sheep infected with Mycobacterium aviumsubspecies paratuberculosis. Veterinary immunology andimmunopathology 2014.
  • [56] Roupie, V., Viart, S., Leroy, B., Romano, M., et al., Immunogenicityof eight Mycobacterium avium subsp. paratuberculosisspecific antigens in DNA vaccinated and Map infected mice.Veterinary Immunology and Immunopathology 2012, 145,74-85.
  • [57] Gurung, R. B., Begg, D. J., Purdie, A. C., Bannantine, J. P.,Whittington, R. J., Antigenicity of Recombinant Maltose BindingProtein-Mycobacterium avium subsp. paratuberculosis FusionProteins with and without Factor Xa Cleaving. Clinical andVaccine Immunology 2013, 20, 1817-1826.[Crossref]
  • [58] Tjalsma, H., Schaeps, R. M., Swinkels, D. W., Immunoproteomics:From biomarker discovery to diagnostic applications.PROTEOMICS-Clinical Applications 2008, 2, 167-180.
  • [59] Robinson, W. H., Antigen arrays for antibody profiling. Currentopinion in chemical biology 2006, 10, 67-72.
  • [60] Hueber, W., Robinson, W. H., Proteomic biomarkers forautoimmune disease. Proteomics 2006, 6, 4100-4105.[Crossref]
  • [61] Robinson, W. H., DiGennaro, C., Hueber, W., Haab, B. B., etal., Autoantigen microarrays for multiplex characterization ofautoantibody responses. Nature medicine 2002, 8, 295-301.
  • [62] Pan, C., Xu, S., Zhou, H., Fu, Y., et al., Recent developments inmethods and technology for analysis of biological samples byMALDI-TOF-MS. Analytical and bioanalytical chemistry 2007,387, 193-204.
  • [63] Villar-Garea, A., Griese, M., Imhof, A., Biomarker discoveryfrom body fluids using mass spectrometry. Journal of ChromatographyB 2007, 849, 105-114.
  • [64] Philip, R., Murthy, S., Krakover, J., Sinnathamby, G., et al.,Shared immunoproteome for ovarian cancer diagnostics andimmunotherapy: potential theranostic approach to cancer.Journal of proteome research 2007, 6, 2509-2517.
  • [65] Carmona, S. J., Sartor, P. A., Leguizamón, M. S., Campetella, O.E., Agüero, F., Diagnostic peptide discovery: prioritization ofpathogen diagnostic markers using multiple features. PloS one2012, 7, e50748.[Crossref]
  • [66] Goto, Y., Carter, D., Reed, S. G., Immunological dominanceof Trypanosoma cruzi tandem repeat proteins. Infection andimmunity 2008, 76, 3967-3974.
  • [67] Cooley, G., Etheridge, R. D., Boehlke, C., Bundy, B., et al.,High throughput selection of effective serodiagnostics forTrypanosoma cruzi infection. PLoS neglected tropical diseases2008, 2, e316.
  • [68] List, C., Qi, W., Maag, E., Gottstein, B., et al., Serodiagnosis ofEchinococcus spp. infection: explorative selection of diagnosticantigens by peptide microarray. PLoS neglected tropicaldiseases 2010, 4, e771.
  • [69] Singh, H., Ansari, H. R., Raghava, G. P., Improved methodfor linear B-cell epitope prediction using Antigen’s primarysequence. PloS one 2013, 8, e62216.[Crossref]
  • [70] Gao, J., Faraggi, E., Zhou, Y., Ruan, J., Kurgan, L., BEST:improved prediction of B-cell epitopes from antigen sequences.PloS one 2012, 7, e40104.[Crossref]
  • [71] Odorico, M., Pellequer, J. L., BEPITOPE: predicting the locationof continuous epitopes and patterns in proteins. Journal ofMolecular Recognition 2003, 16, 20-22.
  • [72] Rubinstein, N. D., Mayrose, I., Martz, E., Pupko, T., Epitopia: aweb-server for predicting B-cell epitopes. BMC bioinformatics2009, 10, 287.
  • [73] Saha, S., Bhasin, M., Raghava, G. P., Bcipep: a database ofB-cell epitopes. BMC genomics 2005, 6, 79.[Crossref]
  • [74] Sweredoski, M. J., Baldi, P., PEPITO: improved discontinuousB-cell epitope prediction using multiple distance thresholdsand half sphere exposure. Bioinformatics 2008, 24, 1459-1460.[Crossref]
  • [75] Liang, S., Zheng, D., Standley, D. M., Yao, B., et al., EPSVR andEPMeta: prediction of antigenic epitopes using support vectorregression and multiple server results. BMC bioinformatics2010, 11, 381.
  • [76] Haslam, N. J., Gibson, T. J., EpiC: an open resource for exploringepitopes to aid antibody-based experiments. Journal ofproteome research 2010, 9, 3759-3763.
  • [77] Vita, R., Zarebski, L., Greenbaum, J. A., Emami, H., et al., Theimmune epitope database 2.0. Nucleic acids research 2009,gkp1004.
  • [78] Marchler-Bauer, A., Lu, S., Anderson, J. B., Chitsaz, F., etal., CDD: a Conserved Domain Database for the functionalannotation of proteins. Nucleic acids research 2011, 39,D225-D229.
  • [79] Facciuolo, A., Mutharia, L. M., Mycobacterial glycoproteins: anovel subset of vaccine candidates. Frontiers in cellular andinfection microbiology 2014, 4.
  • [80] Comstock, L. E., Kasper, D. L., Bacterial glycans: key mediatorsof diverse host immune responses. Cell 2006, 126, 847-850.[Crossref]
Typ dokumentu
Bibliografia
Identyfikatory
Identyfikator YADDA
bwmeta1.element.-psjd-doi-10_1515_ped-2015-0001
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