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Chromatin immunoprecipitation — new approach for revealing histone modifications in plants under heavy metal stress — theoretical review on advantages, drawbacks and questions

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Języki publikacji
EN
Abstrakty
EN
Heavy metal contamination is a major environmental problem. A coordinated network of molecular processes participates in plant response to heavy metals. The metal-dependent gene expression is regulated on multiple levels and may include chromatin modifi cations. One of the methods which allows to understand the role of histone post-translational modifi cations in plant cell response to heavy metals may be chromatin immunoprecipitation.
Rocznik
Strony
7--10
Opis fizyczny
Bibliogr. 20 poz.
Twórcy
  • Department of Plant Ecophysiology, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland, piotrekwasniewski@gmail.com
Bibliografia
  • [1] Hsieh, and Fisher. “Biology of Chromatin Dynamics.” Annual Review of Plant Biology 56 (2005): 327.
  • [2] Boyko, and Kovaltchuk. “Epigentic Control of Plant Stress Response.” Environmental and Molecular Mutagenesis 49 (2008): 61.
  • [3] Godt, et al. “Th e toxicity of cadmium and resulting hazards for human health.” Journal of Occupational Medicine and Toxicology 1 (2006).
  • [4] Bertin, and Averbeck. “Cadmium: cellular eff ects, modifi ca tions of biomolecules, modulation of DNA repair and genotoxic consequences.” Biochimie 88 (2006): 1549.
  • [5] Maksymiec. “Signaling responses in plants to heavy metal stress.” Acta Physiologiae Plantarum 29 (2007): 177.
  • [6] Rodriguez-Serrano, et al. “Cellular Response of Pea Plants to Cadmium Toxicity: Cross Talk between Reactive Oxygen Species, Nitric Oxide, and Calcium.” Plant Physiology 150 (2009): 229.
  • [7] Sokol, et al. “Up-regulation of stress-inducible genes in tobacco and Arabidopsis cells in response to abiotic stresses and ABA treatment correlates with dynamic changes in histone H3 and H4 modifi cations.” Planta 227 (2007): 245.
  • [8] Chinnusamy, and Zhu. “Epigenetic regulation of stress responses in plants.” Current Opinion in Plant Biology 12 (2009): 133.
  • [9] Zhao, et al. “Characteristics of cadmium uptake in two contrasting ecotypes of the hyperaccumulator Th laspi caerulescens.” Journal of Experimental Botany 53.368 (2002): 535.
  • [10] Clemens. “Toxic metal accumulation, responses to exposure and mechanisms of tolerance in plants.” Biochimie. 88 (2006): 707.
  • [11] Xu, et al. “Th e cation-effl ux transporter BjCET2 mediates zinc and cadmium accumulation in Brassica juncea L. leaves.” Plant Cell Reports 28 (2009): 1235.
  • [12] Lister, et al. “Highly Integrated Single Base Resolution Maps of the Epigenome in Arabidopsis.” Cell 133 (2008): 523.
  • [13] Zilberman, et al. “Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.” Nature Genetics 39 (2007): 61.
  • [14] Zhu. “Epigenome Sequencing Comes of Age.” Cell 133 (2008): 395.
  • [15] Pawlak, and Deckert. “Histone modifi cations dunder environmental stress.” Biological Letters 44(2007): 53.
  • [16] Haring, et al. “Chromatin immunoprecipitation: optimiza tion, quantitative analysis and data normalization.” Plant Methods 3.11 (2007).
  • [17] Saleh, Alvarez-Venegas, and Avramova. “An effi cient chromatin immunoprecipitation (ChIP) protocol for studying histone modifi cations in Arabidopsis plants.” Nature Protocols 3.6 (2008): 1018.
  • [18] Park. “ChIP–seq: advantages and challenges of a maturing technology.” Nature Review Genenetics (2009) advance online publication.
  • [19] Dashek. Methods in Plant Electron Microscopy and Cytochemistry. Humana Press Inc., 2000.
  • [20] Deepak, et al. “Real-Time PCR: Revolutionizing Detection and Expression Analysis of Genes.” Current Genetics 8 (2007): 234.
Typ dokumentu
Bibliografia
Identyfikator YADDA
bwmeta1.element.baztech-697a6d18-e26c-4400-910a-f79a99a6d010
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